IL_7OLC_094

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_094 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.1325

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

7OLC|1|1|G|2239
7OLC|1|1|C|2240
*
7OLC|1|1|G|2270
7OLC|1|1|C|2271
7OLC|1|1|A|2272
7OLC|1|1|U|2273

Current chains

Chain 1

26S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41-A