IL_7OLC_111

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7OLC|1|1|U|2819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_111 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.1522

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7OLC|1|1|G|2787
7OLC|1|1|U|2788
7OLC|1|1|G|2789
*
7OLC|1|1|U|2817
7OLC|1|1|U|2818
7OLC|1|1|U|2819
7OLC|1|1|U|2820
7OLC|1|1|U|2821

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LI

60S ribosomal protein L10-like protein