IL_7OLC_114

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7OLC|1|1|G|2904, 7OLC|1|1|A|2905

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_114 not in the Motif Atlas

Homologous match to IL_5TBW_108

Geometric discrepancy: 0.1519

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7OLC|1|1|C|2838
7OLC|1|1|U|2839
7OLC|1|1|C|2840
*
7OLC|1|1|G|2902
7OLC|1|1|U|2903
7OLC|1|1|G|2904
7OLC|1|1|A|2905
7OLC|1|1|G|2906

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LV

60S ribosomal protein l23-like protein