IL_7OLC_151

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7OLC|1|2|U|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_151 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1552

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7OLC|1|2|G|140
7OLC|1|2|G|141
7OLC|1|2|A|142
7OLC|1|2|U|143
7OLC|1|2|A|144
7OLC|1|2|A|145
7OLC|1|2|C|146
*
7OLC|1|2|G|162
7OLC|1|2|C|163
7OLC|1|2|U|164
7OLC|1|2|A|165
7OLC|1|2|A|166
7OLC|1|2|U|167
7OLC|1|2|A|168
7OLC|1|2|C|169

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-like protein

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24