IL_7OLC_159

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CGACCC

Length

9 nucleotides

Bulged bases

7OLC|1|2|C|377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_159 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1121

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7OLC|1|2|G|360
7OLC|1|2|A|361
7OLC|1|2|G|362
*
7OLC|1|2|C|373
7OLC|1|2|G|374
7OLC|1|2|A|375
7OLC|1|2|C|376
7OLC|1|2|C|377
7OLC|1|2|C|378

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein s9-like protein

Chain SX

40S ribosomal protein s23-like protein