IL_7OLC_165

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7OLC|1|2|A|538, 7OLC|1|2|A|539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_165 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.3224

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7OLC|1|2|G|511
7OLC|1|2|A|512
7OLC|1|2|G|513
*
7OLC|1|2|C|533
7OLC|1|2|G|534
7OLC|1|2|A|535
7OLC|1|2|G|536
7OLC|1|2|G|537
7OLC|1|2|A|538
7OLC|1|2|A|539
7OLC|1|2|C|540

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein s9-like protein

Chain Se

40S ribosomal protein S30