IL_7OLC_192

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_192 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1128

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7OLC|1|2|G|1108
7OLC|1|2|G|1109
7OLC|1|2|A|1110
7OLC|1|2|G|1111
7OLC|1|2|U|1112
7OLC|1|2|A|1113
7OLC|1|2|U|1114
7OLC|1|2|G|1115
*
7OLC|1|2|U|1126
7OLC|1|2|G|1127
7OLC|1|2|A|1128
7OLC|1|2|A|1129
7OLC|1|2|A|1130
7OLC|1|2|C|1131

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41-A

Chain SX

40S ribosomal protein s23-like protein