IL_7OLC_204

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7OLC|1|2|A|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_204 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.187

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7OLC|1|2|C|1277
7OLC|1|2|G|1278
*
7OLC|1|2|C|1422
7OLC|1|2|A|1423
7OLC|1|2|G|1424

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2-like protein

Chain SD

40S ribosomal protein S3-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain SU

40S ribosomal protein S20-like protein

Chain Sd

uS14