IL_7OLC_209

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GCCG

Length

6 nucleotides

Bulged bases

7OLC|1|2|C|1369, 7OLC|1|2|C|1370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_209 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.1966

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7OLC|1|2|C|1348
7OLC|1|2|C|1349
*
7OLC|1|2|G|1368
7OLC|1|2|C|1369
7OLC|1|2|C|1370
7OLC|1|2|G|1371

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16-like protein

Chain SU

40S ribosomal protein S20-like protein