IL_7OLC_212

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUG*CCGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_212 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3217

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7OLC|1|2|C|1490
7OLC|1|2|C|1491
7OLC|1|2|U|1492
7OLC|1|2|U|1493
7OLC|1|2|G|1494
*
7OLC|1|2|C|1505
7OLC|1|2|C|1506
7OLC|1|2|G|1507
7OLC|1|2|G|1508
7OLC|1|2|G|1509

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S19-like protein