IL_7OLC_215

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_215 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.1266

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OLC|1|2|G|1634
7OLC|1|2|C|1635
7OLC|1|2|C|1636
7OLC|1|2|C|1637
*
7OLC|1|2|G|1756
7OLC|1|2|U|1757
7OLC|1|2|A|1758
7OLC|1|2|A|1759
7OLC|1|2|C|1760

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain Ln

60S ribosomal protein L41-A