IL_7OLC_225

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAC*GAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_225 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1539

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7OLC|1|2|C|1674
7OLC|1|2|G|1675
7OLC|1|2|G|1676
7OLC|1|2|A|1677
7OLC|1|2|C|1678
*
7OLC|1|2|G|1715
7OLC|1|2|A|1716
7OLC|1|2|A|1717
7OLC|1|2|A|1718
7OLC|1|2|G|1719

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-like protein

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8