IL_7OLC_250

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUU*ACUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_250 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.273

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7OLC|1|1|C|1102
7OLC|1|1|A|1103
7OLC|1|1|U|1104
7OLC|1|1|U|1105
*
7OLC|1|1|A|1119
7OLC|1|1|C|1120
7OLC|1|1|U|1121
7OLC|1|1|G|1122

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein l7-like protein

Chain Lb

60S ribosomal protein L29