IL_7OLC_288
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAU*GCACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLC_288 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3618
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
7OLC|1|2|G|1038
7OLC|1|2|G|1039
7OLC|1|2|G|1040
7OLC|1|2|A|1041
7OLC|1|2|U|1042
*
7OLC|1|2|G|1071
7OLC|1|2|C|1072
7OLC|1|2|A|1073
7OLC|1|2|C|1074
7OLC|1|2|C|1075
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein S0
- Chain SB
- 40S ribosomal protein S1
- Chain SN
- 40S ribosomal protein S13-like protein
- Chain SV
- 40S ribosomal protein S21-like protein
- Chain SW
- 40S ribosomal protein S22-like protein
- Chain Sa
- 40S ribosomal protein S26
- Chain Sb
- Ribosomal protein s27-like protein
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