IL_7OLC_291

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCGG*CACGCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_291 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3958

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7OLC|1|2|U|1172
7OLC|1|2|G|1173
7OLC|1|2|C|1174
7OLC|1|2|G|1175
7OLC|1|2|G|1176
*
7OLC|1|2|C|1455
7OLC|1|2|A|1456
7OLC|1|2|C|1457
7OLC|1|2|G|1458
7OLC|1|2|C|1459
7OLC|1|2|G|1460

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein s15-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain SS

Putative ribosomal protein