IL_7OLD_047

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUCG*CAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_047 not in the Motif Atlas

Geometric match to IL_4OQU_001

Geometric discrepancy: 0.3837

The information below is about IL_4OQU_001

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

7OLD|1|1|A|995
7OLD|1|1|C|996
7OLD|1|1|U|997
7OLD|1|1|C|998
7OLD|1|1|G|999
*
7OLD|1|1|C|1018
7OLD|1|1|A|1019
7OLD|1|1|U|1020

Current chains

Chain 1

26S rRNA

Nearby chains

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain LD

60S ribosomal protein l5-like protein

Chain LI

60S ribosomal protein L10-like protein