IL_7OLD_072

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

7OLD|1|1|U|1799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_072 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.1584

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7OLD|1|1|G|1604
7OLD|1|1|G|1605
*
7OLD|1|1|U|1798
7OLD|1|1|U|1799
7OLD|1|1|C|1800

Current chains

Chain 1

26S rRNA

Nearby chains

Chain Lr

60S ribosomal protein L41-A