IL_7OLD_093
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 7OLD|1|1|U|2122, 7OLD|1|1|U|2138, 7OLD|1|1|C|2142
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_093 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1313
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|1|C|2119
7OLD|1|1|G|2120
7OLD|1|1|A|2121
7OLD|1|1|U|2122
7OLD|1|1|G|2123
7OLD|1|1|G|2124
*
7OLD|1|1|U|2136
7OLD|1|1|G|2137
7OLD|1|1|U|2138
7OLD|1|1|U|2139
7OLD|1|1|G|2140
7OLD|1|1|A|2141
7OLD|1|1|C|2142
7OLD|1|1|G|2143
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain Lp
- 60S ribosomal protein L43-like protein
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