IL_7OLD_100

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7OLD|1|1|A|2244, 7OLD|1|1|C|2250, 7OLD|1|1|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_100 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.1485

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7OLD|1|1|C|2240
7OLD|1|1|C|2241
7OLD|1|1|A|2242
7OLD|1|1|A|2243
7OLD|1|1|A|2244
7OLD|1|1|U|2245
7OLD|1|1|G|2246
7OLD|1|1|C|2247
7OLD|1|1|C|2248
7OLD|1|1|U|2249
7OLD|1|1|C|2250
7OLD|1|1|G|2251
*
7OLD|1|1|C|2267
7OLD|1|1|G|2268
7OLD|1|1|C|2269
7OLD|1|1|G|2270

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

60S ribosomal protein L41-A