IL_7OLD_125
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 7OLD|1|1|A|3100, 7OLD|1|1|C|3101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_125 not in the Motif Atlas
- Homologous match to IL_5TBW_114
- Geometric discrepancy: 0.15
- The information below is about IL_5TBW_114
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7OLD|1|1|C|2962
7OLD|1|1|A|2963
7OLD|1|1|A|2964
7OLD|1|1|U|2965
*
7OLD|1|1|A|3097
7OLD|1|1|G|3098
7OLD|1|1|A|3099
7OLD|1|1|A|3100
7OLD|1|1|C|3101
7OLD|1|1|G|3102
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
Coloring options: