IL_7OLD_149

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

7OLD|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_149 not in the Motif Atlas

Geometric match to IL_4V88_387

Geometric discrepancy: 0.1416

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7OLD|1|2|G|42
7OLD|1|2|A|43
7OLD|1|2|U|44
7OLD|1|2|U|45
7OLD|1|2|A|46
7OLD|1|2|A|47
7OLD|1|2|G|48
*
7OLD|1|2|C|428
7OLD|1|2|G|429
7OLD|1|2|C|430

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

Elongation factor 2

Chain SX

40S ribosomal protein s23-like protein