IL_7OLD_153

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_153 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.1365

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7OLD|1|2|G|108
7OLD|1|2|U|109
7OLD|1|2|U|110
7OLD|1|2|A|111
*
7OLD|1|2|U|299
7OLD|1|2|U|300
7OLD|1|2|U|301
7OLD|1|2|C|302

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11-like protein