IL_7OLD_156

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7OLD|1|2|U|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_156 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1967

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7OLD|1|2|G|140
7OLD|1|2|G|141
7OLD|1|2|A|142
7OLD|1|2|U|143
7OLD|1|2|A|144
7OLD|1|2|A|145
7OLD|1|2|C|146
*
7OLD|1|2|G|162
7OLD|1|2|C|163
7OLD|1|2|U|164
7OLD|1|2|A|165
7OLD|1|2|A|166
7OLD|1|2|U|167
7OLD|1|2|A|168
7OLD|1|2|C|169

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-like protein

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24