IL_7OLD_162

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_162 not in the Motif Atlas

Homologous match to IL_4V88_400

Geometric discrepancy: 0.2499

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7OLD|1|2|C|267
7OLD|1|2|A|268
7OLD|1|2|C|269
7OLD|1|2|G|270
*
7OLD|1|2|C|280
7OLD|1|2|G|281
7OLD|1|2|G|282

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-like protein

Chain SG

40S ribosomal protein S6