IL_7OLD_166

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CGACCC

Length

9 nucleotides

Bulged bases

7OLD|1|2|C|377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_166 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1018

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7OLD|1|2|G|360
7OLD|1|2|A|361
7OLD|1|2|G|362
*
7OLD|1|2|C|373
7OLD|1|2|G|374
7OLD|1|2|A|375
7OLD|1|2|C|376
7OLD|1|2|C|377
7OLD|1|2|C|378

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein s9-like protein

Chain SX

40S ribosomal protein s23-like protein