IL_7OLD_215

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

7OLD|1|2|A|1343, 7OLD|1|2|U|1344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_215 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2186

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7OLD|1|2|A|1342
7OLD|1|2|A|1343
7OLD|1|2|U|1344
7OLD|1|2|A|1345
*
7OLD|1|2|U|1374
7OLD|1|2|U|1375
7OLD|1|2|C|1376
7OLD|1|2|U|1377

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain SU

40S ribosomal protein S20-like protein