IL_7OLD_217
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_217 not in the Motif Atlas
- Homologous match to IL_4V88_458
- Geometric discrepancy: 0.1655
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|2|C|1386
7OLD|1|2|U|1387
7OLD|1|2|A|1388
*
7OLD|1|2|U|1403
7OLD|1|2|G|1404
7OLD|1|2|G|1405
7OLD|1|2|A|1406
7OLD|1|2|A|1407
7OLD|1|2|G|1408
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Putative guanine nucleotide-binding protein
- Chain SF
- 40S ribosomal protein s5-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain SR
- 40S ribosomal protein S17-like protein
Coloring options: