IL_7OLD_222

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7OLD|1|2|C|1633, 7OLD|1|2|A|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_222 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1628

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7OLD|1|2|C|1632
7OLD|1|2|C|1633
7OLD|1|2|G|1634
*
7OLD|1|2|C|1760
7OLD|1|2|A|1761
7OLD|1|2|A|1762
7OLD|1|2|G|1763

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain Sa

40S ribosomal protein S26