IL_7OLD_230

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_230 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1424

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7OLD|1|2|U|1665
7OLD|1|2|G|1666
7OLD|1|2|A|1667
7OLD|1|2|G|1668
*
7OLD|1|2|C|1725
7OLD|1|2|A|1726
7OLD|1|2|A|1727
7OLD|1|2|A|1728

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-like protein

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8