IL_7OLD_257

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7OLD|1|1|U|2819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_257 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.2094

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7OLD|1|1|G|2787
7OLD|1|1|U|2788
7OLD|1|1|G|2789
*
7OLD|1|1|U|2817
7OLD|1|1|U|2818
7OLD|1|1|U|2819
7OLD|1|1|U|2820
7OLD|1|1|U|2821

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LI

60S ribosomal protein L10-like protein