IL_7OLD_268

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUUUC*GUUAUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_268 not in the Motif Atlas

Geometric match to IL_1L9A_008

Geometric discrepancy: 0.3402

The information below is about IL_1L9A_008

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7OLD|1|2|G|1669
7OLD|1|2|C|1670
7OLD|1|2|U|1671
7OLD|1|2|U|1672
7OLD|1|2|U|1673
7OLD|1|2|C|1674
*
7OLD|1|2|G|1719
7OLD|1|2|U|1720
7OLD|1|2|U|1721
7OLD|1|2|A|1722
7OLD|1|2|U|1723
7OLD|1|2|C|1724

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-like protein

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8