IL_7OOD_007
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAGUG*CUCAGUAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OOD_007 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.1274
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
7OOD|1|3|U|192
7OOD|1|3|G|193
7OOD|1|3|A|194
7OOD|1|3|A|195
7OOD|1|3|G|196
7OOD|1|3|U|197
7OOD|1|3|G|198
*
7OOD|1|3|C|205
7OOD|1|3|U|206
7OOD|1|3|C|207
7OOD|1|3|A|208
7OOD|1|3|G|209
7OOD|1|3|U|210
7OOD|1|3|A|211
7OOD|1|3|G|212
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L34
- Chain 1
- 50S ribosomal protein L35
- Chain k
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L28
Coloring options: