IL_7OOD_011

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACUU*AUAC

Length

9 nucleotides

Bulged bases

7OOD|1|3|A|315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_011 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.3271

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

7OOD|1|3|G|314
7OOD|1|3|A|315
7OOD|1|3|C|316
7OOD|1|3|U|317
7OOD|1|3|U|318
*
7OOD|1|3|A|390
7OOD|1|3|U|391
7OOD|1|3|A|392
7OOD|1|3|C|393

Current chains

Chain 3

23S ribosomal RNA

Nearby chains