IL_7OOD_023
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 7OOD|1|3|G|811, 7OOD|1|3|A|823, 7OOD|1|3|A|824, 7OOD|1|3|U|825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OOD_023 not in the Motif Atlas
- Geometric match to IL_4V9F_030
- Geometric discrepancy: 0.1022
- The information below is about IL_4V9F_030
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_57881.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OOD|1|3|G|810
7OOD|1|3|G|811
7OOD|1|3|G|812
*
7OOD|1|3|C|822
7OOD|1|3|A|823
7OOD|1|3|A|824
7OOD|1|3|U|825
7OOD|1|3|C|826
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L34
- Chain a
- 50S ribosomal protein L2
- Chain c
- 50S ribosomal protein L4
- Chain r
- 50S ribosomal protein L22
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