IL_7OOD_029

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUG*CUGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_029 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3338

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7OOD|1|3|U|913
7OOD|1|3|G|914
7OOD|1|3|A|915
7OOD|1|3|U|916
7OOD|1|3|G|917
*
7OOD|1|3|C|934
7OOD|1|3|U|935
7OOD|1|3|G|936
7OOD|1|3|A|937
7OOD|1|3|A|938

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16