IL_7OOD_031

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7OOD|1|3|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_031 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.1981

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

7OOD|1|3|U|1030
7OOD|1|3|U|1031
7OOD|1|3|A|1032
*
7OOD|1|3|U|1194
7OOD|1|3|A|1195

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21