IL_7OOD_040

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

7OOD|1|3|G|1278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_040 not in the Motif Atlas

Geometric match to IL_7A0S_041

Geometric discrepancy: 0.1439

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7OOD|1|3|C|1227
7OOD|1|3|G|1228
7OOD|1|3|U|1229
*
7OOD|1|3|A|1277
7OOD|1|3|G|1278
7OOD|1|3|U|1279
7OOD|1|3|G|1280

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20