IL_7OOD_042

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAG*CAU

Length

6 nucleotides

Bulged bases

7OOD|1|3|A|1250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_042 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.1549

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7OOD|1|3|A|1249
7OOD|1|3|A|1250
7OOD|1|3|G|1251
*
7OOD|1|3|C|1258
7OOD|1|3|A|1259
7OOD|1|3|U|1260

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21

Chain r

50S ribosomal protein L22