IL_7OOD_053

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAAGG*UUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_053 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3046

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7OOD|1|3|U|1501
7OOD|1|3|A|1502
7OOD|1|3|A|1503
7OOD|1|3|G|1504
7OOD|1|3|G|1505
*
7OOD|1|3|U|1538
7OOD|1|3|U|1539
7OOD|1|3|G|1540
7OOD|1|3|A|1541
7OOD|1|3|G|1542

Current chains

Chain 3

23S ribosomal RNA

Nearby chains