IL_7OOD_058

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_058 not in the Motif Atlas

Geometric match to IL_5TBW_075

Geometric discrepancy: 0.155

The information below is about IL_5TBW_075

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

7OOD|1|3|C|1697
7OOD|1|3|A|1698
7OOD|1|3|A|1699
*
7OOD|1|3|U|2002
7OOD|1|3|C|2003
7OOD|1|3|G|2004

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19