IL_7OOD_061

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAG*CGAGAAG

Length

13 nucleotides

Bulged bases

7OOD|1|3|G|1733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_061 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1325

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7OOD|1|3|C|1720
7OOD|1|3|G|1721
7OOD|1|3|U|1722
7OOD|1|3|A|1723
7OOD|1|3|A|1724
7OOD|1|3|G|1725
*
7OOD|1|3|C|1730
7OOD|1|3|G|1731
7OOD|1|3|A|1732
7OOD|1|3|G|1733
7OOD|1|3|A|1734
7OOD|1|3|A|1735
7OOD|1|3|G|1736

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2