IL_7OOD_063
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGCCAAA*UGAUGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 7OOD|1|3|C|1808, 7OOD|1|3|U|1823, 7OOD|1|3|U|1827
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OOD_063 not in the Motif Atlas
- Geometric match to IL_7RQB_070
- Geometric discrepancy: 0.1251
- The information below is about IL_7RQB_070
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.3
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OOD|1|3|U|1805
7OOD|1|3|G|1806
7OOD|1|3|C|1807
7OOD|1|3|C|1808
7OOD|1|3|A|1809
7OOD|1|3|A|1810
7OOD|1|3|A|1811
*
7OOD|1|3|U|1820
7OOD|1|3|G|1821
7OOD|1|3|A|1822
7OOD|1|3|U|1823
7OOD|1|3|G|1824
7OOD|1|3|U|1825
7OOD|1|3|A|1826
7OOD|1|3|U|1827
7OOD|1|3|A|1828
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L2
Coloring options: