IL_7OOD_064

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

7OOD|1|3|C|1845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_064 not in the Motif Atlas

Geometric match to IL_5TBW_084

Geometric discrepancy: 0.128

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7OOD|1|3|C|1844
7OOD|1|3|C|1845
7OOD|1|3|A|1846
7OOD|1|3|G|1847
*
7OOD|1|3|C|1909
7OOD|1|3|G|1910

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2