IL_7OOD_073

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGG*UAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_073 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.2314

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

7OOD|1|3|A|2056
7OOD|1|3|C|2057
7OOD|1|3|G|2058
7OOD|1|3|G|2059
*
7OOD|1|3|U|2625
7OOD|1|3|A|2626
7OOD|1|3|U|2627

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain y

50S ribosomal protein L32