IL_7OOD_084

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAUCGAUG*UUGAU

Length

13 nucleotides

Bulged bases

7OOD|1|3|C|2139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_084 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3766

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7OOD|1|3|A|2136
7OOD|1|3|A|2137
7OOD|1|3|U|2138
7OOD|1|3|C|2139
7OOD|1|3|G|2140
7OOD|1|3|A|2141
7OOD|1|3|U|2142
7OOD|1|3|G|2143
*
7OOD|1|3|U|2162
7OOD|1|3|U|2163
7OOD|1|3|G|2164
7OOD|1|3|A|2165
7OOD|1|3|U|2166

Current chains

Chain 3

23S ribosomal RNA

Nearby chains