IL_7OOD_085

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUA*UUC

Length

7 nucleotides

Bulged bases

7OOD|1|3|G|2211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_085 not in the Motif Atlas

Geometric match to IL_4V88_426

Geometric discrepancy: 0.1665

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OOD|1|3|G|2210
7OOD|1|3|G|2211
7OOD|1|3|U|2212
7OOD|1|3|A|2213
*
7OOD|1|3|U|2227
7OOD|1|3|U|2228
7OOD|1|3|C|2229

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28