IL_7OOD_092

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_092 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.2732

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7OOD|1|3|A|2467
7OOD|1|3|U|2468
7OOD|1|3|A|2469
*
7OOD|1|3|U|2497
7OOD|1|3|G|2498
7OOD|1|3|U|2499
7OOD|1|3|U|2500
7OOD|1|3|U|2501

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L27