IL_7OOD_108

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

7OOD|1|4|G|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_108 not in the Motif Atlas

Homologous match to IL_5J7L_355

Geometric discrepancy: 0.4218

The information below is about IL_5J7L_355

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7OOD|1|4|C|15
7OOD|1|4|G|16
*
7OOD|1|4|U|63
7OOD|1|4|G|64
7OOD|1|4|G|65

Current chains

Chain 4

5S ribosomal RNA

Nearby chains

Chain 3

Large subunit ribosomal RNA; LSU rRNA