IL_7OOD_109

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAACA*UUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_109 not in the Motif Atlas

Geometric match to IL_9E6Q_106

Geometric discrepancy: 0.2583

The information below is about IL_9E6Q_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.1

Basepair signature

cWW-tSH-L-R-L-tHH-cWW

Number of instances in this motif group

5

Unit IDs

7OOD|1|4|G|21
7OOD|1|4|G|22
7OOD|1|4|A|23
7OOD|1|4|A|24
7OOD|1|4|A|25
7OOD|1|4|C|26
7OOD|1|4|A|27
*
7OOD|1|4|U|53
7OOD|1|4|U|54
7OOD|1|4|A|55
7OOD|1|4|A|56
7OOD|1|4|G|57
7OOD|1|4|C|58

Current chains

Chain 4

5S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L5

Chain n

50S ribosomal protein L18