IL_7OOD_112
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAUGUAG*UGAGAAUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OOD_112 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1682
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7OOD|1|4|C|69
7OOD|1|4|G|70
7OOD|1|4|A|71
7OOD|1|4|A|72
7OOD|1|4|U|73
7OOD|1|4|G|74
7OOD|1|4|U|75
7OOD|1|4|A|76
7OOD|1|4|G|77
*
7OOD|1|4|U|87
7OOD|1|4|G|88
7OOD|1|4|A|89
7OOD|1|4|G|90
7OOD|1|4|A|91
7OOD|1|4|A|92
7OOD|1|4|U|93
7OOD|1|4|A|94
7OOD|1|4|G|95
Current chains
- Chain 4
- 5S ribosomal RNA
Nearby chains
- Chain 3
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L27
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